16 March 2009

Marmorkrebs on the road: Texas Academy of Science 2009

Texas Academy of Science meeting 2009
UTPA REU students. L to R: Ammie Ortiz, Amery Yang, Stephanie Castellanos, Ashley Longoria, Stephanie Jimenez, Jess Valdez.

Stephanie Jimenez, my REU student, was in Junction, Texas, recently for the annual Texas Academy of Science meeting on March 6th. She had a new talk to give, quite different from her SICB poster. It was titled, “Peaceful parthenogens? Social behavior of Marmorkrebs, a parthenogenetic crayfish.”

If you’re one of the individuals Stephanie met at TAS, welcome!

10 March 2009

Pic of the moment: 10 March 2009

Marmorkrebs interacting
Two Marmorkrebs interacting. The one on the right (the blur) has had enough, and is tailflipping away.

Crayfish fighting has been extensively and intensively studied. I may write about it in some future blog posts.

09 March 2009

Open Lab 2008 hits town

I got my printed and bound copy of The Open Laboratory 2008 blogging anthology in the mail today. Though I say it myself being a contributor, it looks very nice. The only qualm I have is that the image quality is a little patchy, but being restricted to black and white makes conversion from the colour we’ve come to know on the web understandably problematic. I’m willing to bet that most people didn’t pick graphics for their blog posts with the idea of them being reprinted in a black and white anthology at the end of the year.

05 March 2009

Marmorkrebs.org redesign

Here's a look at the new design for the Marmorkrebs.org home page.

Marmorkrebs.org home page
What do you think?

03 March 2009

A matter of patience


This graph shows one of the biggest obstacles facing researchers who want to work with Marmorkrebs and, to a lesser degree, a lot of other crustaceans. It’s a graph comparing generation time of common research animals. How long does it take for an organism to grow and reproduce? Clearly, most modern model organisms have been selected in part for short generation times. Live fast, die young.

While I don't pretend that this graph is exhaustive, the only datum on this graph longer than Marmorkrebs deserves comment. Xenopus laevis has been used for research for a long time, but even it is competing with a related species, Xenopus tropicalis, which has a much shorter generation time.

Most decapod crustacean researchers have dealt with this problem in a straightforward way: they only study adults, and they don’t rear animals in the lab. Instead, crayfish, lobsters, and crabs are collected from wild populations or from commercial suppliers. But this seems rather too limiting on research that can be done.

There may be a silver lining for Marmorkrebs, however. Generation time may be long, but there are two mitigating factors. First, crayfish lifespan is relatively long. Second, once a Marmorkrebs hits reproductive age, it can generate new batches of eggs in a couple of months. I'm not sure how many times fruit flies or C. elegans can generate offspring in their brief lives, but the number of reproductive opportunities per animal may be lower for some of the fast-living animals.

Furthermore, short life span has traditionally been a major advantage for genetic research, where breeding used to be necessary to examine the traits of interest. You had to have animals reproduce to see the patterns of inheritance Now that there are many more genetic tools available, straight ahead breeding experiments may be a little less common, less of a staple experiment, than they used to be. Instead of trying to breed a mouse with certain characteristics, you can use directed genetic tools to affect the relevant genes.

Given that Marmorkrebs reproduce asexually, those directed tools might be able to take the place of the traditional breeding experiments. Thus, it might not matter that Marmorkrebs live slow and die old.

02 March 2009

Carnival!

The latest Circus of the Spineless, #36, is now out, this month hosted by Invertebrate Diaries. Support invert blogging!

Open Laboaratory 2008 now available

The Open Laboratory 2008 coverThe third annual science blogging anthology is now available at Lulu. When you get your copy, you’ll want to turn to page 86.

Additional: In the spirit of openness, I will remind everyone that you can read the book for free by following the links here. Inconvenient compared to a nice, unified, cleanly typeset, high-resolution, portable compilation, if you ask me.

There is, however, another reason to buy the compilation (which is available for immediate download as a PDF as well as a traditional paperback format). Bora writes:

In a few weeks, the book will also be available at other online retailers, e.g., Amazon.com, but we prefer that you buy from Lulu.com as the proceeds will go towards organizing ScienceOnline‘10 next January.

ScienceOnline is a science blogging conference. Next year’s will be the fourth such event. Of course, people blogged about it at length, but a very brief intro to last year’s is here.